PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14813.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 281aa    MW: 30699.7 Da    PI: 4.8283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14813.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-1889138255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  Rsa1.0_14813.1_g00001.1  89 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTADMAARAHDVAALAIKG 138
                              69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.91989146IPR001471AP2/ERF domain
SMARTSM003802.3E-3689152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-3189147IPR001471AP2/ERF domain
PfamPF008474.0E-1289138IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2189146IPR016177DNA-binding domain
PRINTSPR003676.0E-1090101IPR001471AP2/ERF domain
CDDcd000181.31E-3190148No hitNo description
PRINTSPR003676.0E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
METHLNIEKS ASQVTLTTAA IFTVSSSSSS STASLSSHTT SSSSSSRILN FSEDTNSKRK  60
ASRRSLPVQE DDDNVVKRRK TSGGDKHPTY RGVRMRSWGK WVSEIREPRK KSRIWLGTYP  120
TADMAARAHD VAALAIKGTT AYLNFPELSG EFPRPVTNSP KDIQAAATAA AVNWQASDDE  180
AEPSGEAMAQ SMSGSVVFSS DNTTQESLEA SCASTTSFAD KDSEEEKLFD LPDLFSDEMM  240
IRDDGFCCYS STWQLCGTDA GFRVDEPCFF FSDLNHTTPN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1590146360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15779KRKASRRSLPVQEDDDNVVKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893991e-117AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634433.11e-143PREDICTED: ethylene-responsive transcription factor ERF034-like
RefseqXP_013665710.11e-143PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-112ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D3C6B51e-143A0A0D3C6B5_BRAOL; Uncharacterized protein
STRINGBra040333.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-95ERF family protein